The BAFTA Games Awards are part of the London Games Festival, which will run from March 26 to April 6.
BAFTA will announce the nominees for the 2020 BAFTA Games Awards on Tuesday.
Kojima left Konami in December 2015, and his Kojima Productions studio became independent with his departure.
BAFTA describes the Fellowship as “the highest accolade bestowed by BAFTA upon an individual in recognition of an outstanding and exceptional contribution to film, games or television.”